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Top-Down and Bottom-Up Approaches in Phytoplasma Research: Advancing Pathogenesis, Taxonomy, and Diagnostics
Fig. 1. Symptoms of potato purple top (PPT) phytoplasma infection in tomato plants showing abnormalities in vegetative and reproductive growth. (A–C) Abnormalities in reproductive growth in normal flowering tomato line (flower after 10–12 leaves). (A) Big bud (BB) or phyllody, (B) cauliflower-like inflorescence (CLI), (C) disrupted sympodial growth pattern (DSGP), (D) PPT phytoplasma-induced alterations in vegetative growth. Witches’-broom (WB) is characterized by dense clustering of shoots due to abnormal branching. (E–H) Abnormalities in reproductive growth in early flowering tomato line (flower after 3–5 leaves, E–H). (E) virescence, (F) twin flowers, (G) parthenocarpy, (H) vivipary.
Fig. 1. Symptoms of potato purple top (PPT) phytoplasma infection in tomato plants showing abnormalities in vegetative and reproductive growth. (A–C) Abnormalities in reproductive growth in normal flowering tomato line (flower after 10–12 leaves). (A) Big bud (BB) or phyllody, (B) cauliflower-like inflorescence (CLI), (C) disrupted sympodial growth pattern (DSGP), (D) PPT phytoplasma-induced alterations in vegetative growth. Witches’-broom (WB) is characterized by dense clustering of shoots due to abnormal branching. (E–H) Abnormalities in reproductive growth in early flowering tomato line (flower after 3–5 leaves, E–H). (E) virescence, (F) twin flowers, (G) parthenocarpy, (H) vivipary.

Author:Wei Wei*

Abstract:

Phytoplasmas are minute, cell wall-less bacteria responsible for devastating plant diseases, leading to significant economic loss in agriculture. This article explores recent advancements in phytoplasma research, focusing on pathogenesis, taxonomy, and diagnostics through top-down and bottom-up approaches. Top-down multi-omics studies have provided a system-level understanding of phytoplasma-induced disruptions, particularly in sugar metabolism and hormone signaling, revealing their extensive impact on plant physiology. Complementing this, bottom-up strategies have dissected molecular interactions, elucidating how phytoplasmas derail meristem fate, modulate plant growth patterns, alter plant architecture, and induce characteristic symptoms. Advances in taxonomy and classification have improved species differentiation, integrating 16S rRNA sequencing, multilocus sequence typing (MLST), and whole-genome sequencing (WGS), with database-guided tools refining classification accuracy. The development of cutting-edge diagnostic technologies, such as clustered regularly interspaced short palindromic repeats-based (CRISPR-based) detection, has significantly enhanced the sensitivity, specificity, and efficiency of phytoplasma identification and surveillance. Additionally, the integration of big data analytics and AI-driven models has pioneered image-based symptom recognition, supporting disease surveillance and monitoring.

Key words:Meristem fate derailment, iPhyClassifier, Artificial intelligence (AI), Omics, Floral transition

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